Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs111889691 chr10:920174 C/CAAAAAAAACA 3.25E-7 504 21.65 25.83 14.5 KM Plot
LGG rs11192739 chr10:107918915 G/T 6.55E-6 509 19.33 27.33 20.97 KM Plot
LGG rs11196693 chr10:116079188 T/C 7.01E-5 507 17.93 23.68 23.17 KM Plot
LGG rs111975004 chr5:169027856 T/C 1.56E-8 507 21.85 24.6 6.83 KM Plot
LGG rs11200968 chr10:86054116 T/C 1.89E-5 495 22.6 23.98 17.73 KM Plot
LGG rs112046719 chr5:169010311 A/G 1.55E-8 507 22.47 23.25 6.83 KM Plot
LGG rs112106376 chr5:169045420 A/G 1.57E-8 506 22.12 24.07 6.83 KM Plot
LGG rs112113606 chr5:169045881 C/T 1.57E-8 506 22.12 24.07 6.83 KM Plot
LGG rs112173307 chr16:67722869 C/T 8.42E-12 508 21.6 31.63 6.47 KM Plot
LGG rs112238534 chr14:102171448 G/A 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs112250539 chr11:123858780 G/T 2.98E-5 506 23.98 20.87 18.35 KM Plot
LGG rs112256515 chr14:24414798 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs112285375 chr10:909165 CA/C 3.25E-8 506 21.77 24.52 14.15 KM Plot
LGG rs11228597 chr11:69024274 A/G 7.65E-5 507 21.87 23.63 20.17 KM Plot
LGG rs112349446 chr5:169044212 C/G 1.57E-8 506 22.12 24.07 6.83 KM Plot